Development and Implementation of a Sustainable Modelling Platform for NanoInformatics


This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement 814426 NanoinformaTIX

eNanoMapper database instance


License: private


CBMN HPRT DTT consumption assay Temperature Programmed Surface Reaction (TPSR) Barrier crossing and ICP-MS Buckingham potentials + Wolf summation Nearest neighbour search with cut-off value Calculated values of Hamaker from Butt HJ, Kappl M. Surface and interfacial forces. Weinheim: Wiley-VCH; 2010 anatase at 25 °C, titration. From Ridleay et al., Langmuir, Vol. 22, No. 26, 2006 Docking and MD Simulations (Patchdock and NAMD) c1+c2, c1 and c2 principle curvatures PackMem, during the last 100ns PBE+U DFTB Classical MD, (a) software: GROMACS 2016 Force Field Matsui et al. Umbrella Sampling GROMACS built-in routine SASA Classical MD, software: DL_POLY 4.09+Plumed Force Field Matsui et al. Umbrella Sampling software: AMS, ReaxFF Kim et al., neutral pH, in water, 310 K after annealing up to 1600K 3 FOLD O SUBSURFACE 2 FOLD O BULK EXP BULK PBE DFTB/DFT(B3LYP) VALUE (DFT(B3LYP)) Nitrogen adsorption isotherm Faure et al., Sci. Technol. Adv. Mater., 2013, 14:023001 Z.Zhang et al., Scientific Reports, 2016, 6:34135 Calculated values in water of Hamaker from Butt HJ, Kappl M. Surface and interfacial forces. Weinheim: Wiley-VCH; 2010 Comprehensive Biomaterials II, Elsevier 2017 Docking and MD Simulations (Patchdock and NAMD) software: AMS, ReaxFF, neutral pH, in water, 310 K after annealing up to 1600K Y. Han et al., Water Research 90 (2016) 247e257 from Ellipsometry measurement (T–W) method in water titration Embedded-atom method potentials


MTS CELL VIABILITY ASSAY DAPI Hoechst 33342 Impedance adherent cells ALAMAR BLUE CELL COUNTER Nuclear Intensity Nuclear area CFE Mitochondrial Membrane Potential dye Lysosomal dye Impedance flow cytometry NRU Ki-67 apoptosis cell cycle cleaved caspase-3 Spectrophotometric Method viability COMET COMET FPG RT-PCR MICRONUCLEUS ASSAY Genotoxicity ATM phospho S1981 H2AX phospho S139 p53 phospho s15 CBMN assay Manual scoring ELISA LUMINEX Annexin V_PI (FACS) Griess Reagent Annexin V (Apoptosis) / PI (Necrosis) LUCIFER YELLOW Intestinal barrier integrity intestinal barrier integrity SEM-EDX TEM Reaction Oxygen Species Detection DLS Nanoparticle tracking Analysis SEM supplier WAXS Batch Dispersion Quality VSSA TGA Filtration ICP-MS SOP-Toxicity Test with Daphnia magna (without NOM) Weighing Optical Microscope FACS analysis Colorimetric assay Keylab cell counter CCK8 assay Pig-A gene Swiss roll HE-Pycnometer in vitro oral mucosa 3D model Confocal microscopy TEM/STEM SAXS OECD TG487 MTT assay ELISA MULTIPLEX method barrier test May grunwald giemsa coloration of BAL cells cytospin biochemistry automate ICP-MS automatic count WAXD sp_ICP-MS Aerosol Characterisation XRD Dustiness JRCNM01001a ISO 10872:2010 Water QualityDetermination of the toxic effects of sediment and soil samples on growth, fertility and reproduction of Caenorhabditis elegans OECD TG 202 Acute Toxicity OECD TG 201 ATR-FTIR HAADF-STEM CHN-analysis commercial kits manual count ICP-OES Potentiometry PSEUDOKIRCHNERIELLA SUBCAPITATA CLS Colimetry Propidium iodide Manual count /100 cells vibrofluidization Vortex Shaker LDH DCFH2-DA EDX TRYPAN BLUE PrestoBlue protocol A13261


COMET ALAMAR BLUE Impedance adherent cells CFE Dot-blot Nanoparticle Tracking Analysis DLS NTA Isothermal Titration Calorimetry (ITC) ZETA POTENTIAL CFDA-AM NRU OECD TG 202 OECD TG 201 EXPOSURE MTS CELL VIABILITY ASSAY Oxiblot® kit, Merck


Expression of adhesion molecules radioactive tag labelling DHE DCFH2-DA MTT Assay WST-1 IL6, TNF, etc By ELISA Cytokinesis Block Micronucleus Cytome (CBMN Cyt) COMET NanoTest FeCell Chemical composition of particles flow cytometry LDH Propidium Iodide uptake fluorescent rhodamine-labeled TEM SAED DHE (Dihydroethidium) and Hoechst 33342


WST-1 LDH ALAMAR BLUE COMET Electron Paramagnetic Resonance (EPR) Fibroblast proliferation


TEER NRU Resazurin LDH CFE Embryonic Stem Cell Test WST-1 ELISA Internalization of latex beads by cells, macrophage activity, inflammation Prothrombotic effects upon systemic administration Differential Centrifugal Sedimentation (DCS) SEM X-ray Photoelectron Spectroscopy (XPS) Electron Paramagnetic Resonance (EPR) TGA ALAMAR BLUE CFDA-AM OECD TG 202 OECD TG 225 OECD TG 217 Plant root length elongation Genotoxicity MICRONUCLEUS ASSAY ICP-MS ICP-OES DLS XRD Porosity OECD TG 210 OECD TG 201 systemic administration


MICRONUCLEUS ASSAY COMET MLA-TK COMET FPG RICC TCC (Coulter counter) TRYPAN BLUE RN XTT ICP-OES TEM SAXS TGA autopsy analysis blood kinetics analysis EDS DLS BET animal info Flow cytometry with PI staining XRD


MTT Assay ALAMAR BLUE Calcein-Ethidium LDH CFE Cytokinesis Block Micronucleus Cytome (CBMN Cyt) DAN fluorimetric assay ELISA COMET CTA DCFH2-DA GSH MDA Electron Paramagnetic Resonance (EPR) Haemolysis assay TEM/SEM DLS Z-Potential in HAM'S-F12 Z-Potential in Water electroacoustic analysis on naturally concentrated samples Raman Spectroscopy UV TEER X-ray Photoelectron Spectroscopy (XPS) Infrared spectroscopy BET Z-Potential in DMEM


CellTiter-Glo (CTG) Automated hematology analyzer Short term oral toxicity Wright-Giemsa modified staining & optical microscopy Plasma (Heparin) Jejunum BAL cell celularity Histopathology COMET MICRONUCLEUS ASSAY AO Fluorescence Hyperspectral image analysis Quantitative PCR EPI-200-SIT OCL-200-EIT TEM DLS Supplier Life-history zFET Acridine Orange (AO) n.a.